Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs56037734 chr11:123526296 G/A 2.86E-5 497 31.87 28.85 26.73 KM Plot
THCA rs56051054 chr3:139263564 G/T 4.69E-5 502 31.5 33.8 19.32 KM Plot
THCA rs56051514 chr3:139269572 G/A 4.83E-5 500 31.53 33.97 19.32 KM Plot
THCA rs56058641 chr3:139265655 G/A 4.35E-10 502 31.47 33.97 19.32 KM Plot
THCA rs56066654 chr11:123526147 T/C 2.86E-5 497 31.87 28.85 26.73 KM Plot
THCA rs56070930 chr15:72032741 A/G 5.88E-10 490 31.6 33.98 13.88 KM Plot
THCA rs56099505 chr11:88080640 C/A 0 497 31.27 35.6 5.23 KM Plot
THCA rs56143728 chr22:43719594 ACATCCATC/A 0.00013 495 31.68 31.88 24.27 KM Plot
THCA rs56148066 chr6:133230115 G/A 3.33E-7 498 31.47 31.72 24.42 KM Plot
THCA rs56160521 chr19:33375632 G/A 2.87E-5 501 31.43 34.43 32.93 KM Plot
THCA rs56170893 chr3:139265722 T/C 4.35E-10 502 31.47 33.97 19.32 KM Plot
THCA rs56173097 chr19:33375647 T/A 2.37E-5 502 31.4 34.82 32.93 KM Plot
THCA rs56173572 chr7:44003743 G/T 3.8E-9 493 31.27 33.27 33.7 KM Plot
THCA rs56210757 chr3:139269160 A/G 5.01E-5 499 31.5 33.97 19.32 KM Plot
THCA rs56218467 chr7:32783383 T/C 0.000101 497 31.47 31.7 31.97 KM Plot